Publications

My work spans statistical methodology and collaborative biomedical research. Topics include survival analysis, precision medicine, clinical trials, medical devices, biomedical AI, and reproducible health-data science.

Statistical Methods–Oriented Publications

  1. Non-parametric Testing for Survival Data With Time-dependent Covariates
    Cui Y. , Lai HJ. , and Peng L.
    Statistica Sinica
    Forthcoming
  2. Dynamic Decision Making With Individualized Variable Selection
    Cai B.† , Cui Y.† , Fu H. , Lloyd-Jones D. , Zhao L. , and Tian L.
    Journal of the American Statistical Association: Theory and Methods
    Forthcoming
    Cai B. and Cui Y. contributed equally
  3. Global Group Testing and Screening With Dynamic Effects
    Cui Y. , and Peng L.
    Statistica Sinica, Jul 2026
    DOI PubMed
  4. Model-based Clustering of Multiple Images Incorporating Covariates
    Cui Y. , Jang JH. , Mannino RG. , and Manatunga AK.
    Statistical Methods in Medical Research, May 2026
    DOI PubMed Paper Award
  5. An IPCW Adjusted Win Statistics Approach in Clinical Trials Incorporating Equivalence Margins to Define Ties
    Cui Y. , Huang B. , Dong G. , Uozumi R. , and Tian L.
    Statistics in Medicine, Jul 2025
    DOI PubMed
  6. A Model-free Framework for Evaluating the Reliability of a New Device With Multiple Imperfect Reference Standards
    Cui Y.† , Yu Q.† , Manatunga AK. , and Jang JH.
    Biometrics, Jan 2025
    Cui Y. and Yu Q. contributed equally
    DOI PubMed Paper Award
  7. A Novel Phase II Single-arm Hybrid Design to Minimize Trial Duration and Enhance Subsequent Phase III Trial Success Rate
    Lu J. , Zhang Y. , Cui Y. , Peng L. , and Chen Z.
    Journal of Applied Statistics, 2025
    DOI PubMed
  8. Inferences for the Distribution of the Duration of Response in a Comparative Clinical Study
    Cui Y. , Huang B. , Mao L. , Uno H. , Wei LJ. , and Tian L.
    Clinical Trials, Oct 2024
    DOI PubMed
  9. Assessing Dynamic Covariate Effects With Survival Data
    Cui Y. , and Peng L.
    Lifetime Data Analysis, Oct 2022
    DOI PubMed
  10. Assessing the Reproducibility of Microbiome Measurements Based on Concordance Correlation Coefficients
    Cui Y. , Peng L. , Hu Y. , and Lai HJ.
    Journal of the Royal Statistical Society: Series C, Aug 2021
    DOI PubMed Paper Award
  11. An Empirical Bayesian Approach for Testing Gene Expression Fold Change and Its Application in Detecting Global Dosage Effects
    Guo Z.† , Cui Y.† , Shi X. , Birchler JA. , Albizua I. , Sherman SL. , and 2 more authors
    NAR Genomics and Bioinformatics, Sep 2020
    Guo Z. and Cui Y. contributed equally
    DOI PubMed Code

Biomedical and Public Health Collaboration–Oriented Publications

  1. Win Statistics (Win Ratio, Win Odds, and Net Benefit): Noncollapsibility and Standardization for Randomized Clinical Trials
    Dong G. , Gamalo-Siebers M. , Cui Y. , Huang B. , Luo X. , and Tian L.
    Journal of Biopharmaceutical Statistics, Feb 2026
    DOI PubMed
  2. Red Teaming ChatGPT in Medicine: Real-world Insights on Model Behavior
    Chang C.†, Farah H.†, Gui H.†, …, Cui Y., …, Shah N., and Daneshjou R.
    npj Digital Medicine, Mar 2025
    Chang C., Farah H., and Gui H. contributed equally
    DOI PubMed
  3. On Approximate Equality of Z-values of the Statistical Tests for Win Statistics (Win Ratio, Win Odds, and Net Benefit)
    Dong G. , Cui Y. , Gamalo-Siebers M. , Liao R. , Liu D. , Hoaglin DC. , and 1 more author
    Journal of Biopharmaceutical Statistics, May 2025
    DOI PubMed
  4. Adjusted Win Ratio Using the Inverse Probability of Treatment Weighting
    Wang D. , Zheng S. , Cui Y. , He N. , Chen T. , and Huang B.
    Journal of Biopharmaceutical Statistics, Jan 2025
    DOI PubMed
  5. Evaluation of ChatGPT-generated Medical Responses: A Systematic Review and Meta-analysis
    Wei Q.† , Yao Z.† , Cui Y.† , Wei B. , Jin Z. , and Xu X.
    Journal of Biomedical Informatics, Mar 2024
    Wei Q., Yao Z., and Cui Y. contributed equally
    DOI PubMed
  6. imply: Improving Cell-type Deconvolution Accuracy Using Personalized Reference Profiles
    Meng G. , Pan Y. , Tang W. , Zhang L. , Cui Y. , Schumacher FR. , and 6 more authors
    Genome Medicine, Apr 2024
    DOI PubMed
  7. Evaluation of ChatGPT’s Performance in Providing Treatment Recommendations for Pediatric Diseases
    Wei Q. , Wang Y. , Yao Z. , Cui Y. , Wei B. , Li T. , and 1 more author
    Pediatric Discovery, Dec 2023
    DOI PubMed
  8. Evaluating the Performance of ChatGPT in Differential Diagnosis of Neurodevelopmental Disorders: A Pediatricians-machine Comparison
    Wei Q. , Cui Y. , Wei B. , Cheng Q. , and Xu X.
    Psychiatry Research, Sep 2023
    DOI PubMed
  9. The Stratified Win Statistics (Win Ratio, Win Odds, and Net Benefit)
    Dong G. , Hoaglin DC. , Huang B. , Cui Y. , Wang D. , Cheng Y. , and 1 more author
    Pharmaceutical Statistics, Jul 2023
    DOI PubMed
  10. Evidence Synthesis Analysis With Prioritized Benefit Outcomes in Oncology Clinical Trials
    Cui Y. , Dong G. , Kuan P. , and Huang B.
    Journal of Biopharmaceutical Statistics, May 2023
    DOI PubMed
  11. Win Statistics (Win Ratio, Win Odds, and Net Benefit) Can Complement One Another to Show the Strength of the Treatment Effect on Time-to-event Outcomes
    Dong G. , Huang B. , Verbeeck J. , Cui Y. , Song J. , Gamalo-Siebers M. , and 5 more authors
    Pharmaceutical Statistics, Jan 2023
    DOI PubMed
  12. Pulmonary Disease Burden in Primary Immune Deficiency Disorders: Data From USIDNET Registry
    Patrawala M. , Cui Y. , Peng L. , Fuleihan RL. , Garabedian EK. , Patel K. , and 1 more author
    Journal of Clinical Immunology, Feb 2020
    DOI PubMed

Conference Abstracts

  1. Data-Driven Personalized Comorbidity Framework: A Population-Stratified Approach
    Hwang YM.† , Cui Y.† , Xu J. , Pan T. , Li R. , Rice B. , and 2 more authors
    In 2026 Annual Research Meeting , May 2026
    Conference abstract
    Hwang YM. and Cui Y. contributed equally
  2. 483: Statistical Analysis for Assessing Reproducibility of Gut Microbiome Compositional Measurements in Young Children With Cystic Fibrosis
    Cui Y. , Peng L. , Hu Y. , Sudakaran S. , Murali S. , and Lai HJ.
    Journal of Cystic Fibrosis, 2021
    Conference abstract
    DOI